Patterns DNA Sequences - Worksheet #5 (Splice site discovery)

Determine the consensus sequences for mouse splice sites.

  • Mouse internal exons

    1. 79 nucleotides

      ATTGTACCCTGTGGTACCTGGGAATTCCCGTGTCCCAGACAGAGACATCCGTGTAGGAAACTATGTAATTCCCCAAGAT

    2. 201 nucleotides

      GTATAGGCGCGGTGCTGCTGGGATCGCGCCTGGGCTGCCTAGAGGCTGAAGTCCCTCCTG ACACAGAAACCTTCATACAT GCAGTGGGCTCAGTGTTTGTGTCTACACTCTTGACCATGGCGATGCCCAACTGGTTGCAC CACCTTATACCTGGACCCTG GGCCCGCCTCTGCCGAGACTGGGATCAGATGTTTGCCTTTG

    3. 203 nucleotides

      GGATGGTGAAGAATGGCAGAGGCTCCGAAGTCTTCTGGCCCCGCTCCTCCTCCGGCCACAAGCAGCCGCGGGCTATGCTG GAACTCTGGACAACGTGGTCCGTGACCTTGTGCGACGACTAAGGCGCCAGCGGGGACGTGGCTCTGGGCTACCCGGCCTA GTTCTGGACGTGGCAGGAGAGTTTTACAAATTTGGCCTAGAAA

    4. 191 nucleotides

      GTGCATGGCGCTGCGCGGTACGGGCCAATATGGTCTGGCAGCTTTGGGACACTTCGCACAGTTTACGTTGCCGACCCTAC ACTTGTGGAGCAGCTCCTGCGACAAGAAAGTCACTGTCCAGAGCGCTGTAGTTTCTCATCATGGGCAGAGCACCGTCGCC GCCACCAGCGTGCTTGCGGATTGCTAACGGC

  • Mouse introns

    1. 320 nucleotides

      GTGAGTGATCTAGAACTTATACCGTTTCCTGTCTGGAAAGGCCCAATAAACGTGGGTGATCTTGACCTCTGACAAACATA ACAAAACATATAAGACTCAGCAGATAGACCCACTGACAGTCCCACGTAGGTCTGGAACATCAACAAAGATATTTGGACTA TCATTTTCCCTCCCACAACCCCCTGCCCTCACTGACCAAGAAGTCCCTTAGTGGCCTCAGATGCCATTCCAACCAGTGGC CATCTAATGTTCTTTACCAATTAAGGTACCATTTTAGACCCACCCACAGTGACAACCTTCTTCCCCTCCCCCGTTTCCAG

    2. 86 nucleotides

      GTGAGTCCTAAAGCAGAGTTAAGGACCTGTGTAGATAGTTCAGGGTCCTAGATGGCTGATGTGTGACTGTGCCCCCTCCT GGCCAG

    3. 73 nucleotides

      GTAAGGCCCGGGGGCAGGGGACTGGGTATCAATACTGCACTGGAGCAGTGAGGCAGCGTGCCTTCCTTCTCAG

    4. 264 nucleotides

      GTGAAGTTCTCTCCTATATTGCAATTGCCATTTCCAGAGTGCAGTGTCCATGTCCATCCCTGTCCCCACCCCACACACAC ACACCTCCTGTGCTCACCCTCCCCCTACCCCCCATCCCGAGAACTCTAGGGCCACTTTTCTGATTCAGGGATGAAGGTTT AGCTTTAGTAATTCCTTGGTCCCCGACCACTCCCTCCCTATGCTACCCCCCTTCACTGGGGTCCCCATGTCTAACAGCTC AGATGATCTCACCTGTTCCCTCAG