Patterns DNA Sequences - Worksheet #2 (Splice site discovery)

Determine the consensus sequences for mouse splice sites.

  • Mouse internal exons

    1. 203 nucleotides

      GGATGGTGAAGAATGGCAGAGGCTCCGAAGTCTTCTGGCCCCGCTCCTCCTCCGGCCACAAGCAGCCGCGGGCTATGCTG GAACTCTGGACAACGTGGTCCGTGACCTTGTGCGACGACTAAGGCGCCAGCGGGGACGTGGCTCTGGGCTACCCGGCCTA GTTCTGGACGTGGCAGGAGAGTTTTACAAATTTGGCCTAGAAA

    2. 173 nucleotides

      CCCAGAGGCACGTGGAGCTGCGAGAAGGTGAAGCTGCGATGAGGAACCAGGGAAAGCCTGAGGAGGATATGCCGTCTGGG CATCACTTAACCCACTTCCTTTTTCGGGAAAAGGTGTCTGTCCAGTCCATAGTGGGGAATGTGACAGAGCTACTACTGGC TGGAGTGGACACG

    3. 170 nucleotides

      GTATCCAATACGCTCTCCTGGACACTCTATGAGCTTTCCCGGCACCCCGATGTCCAGACTGCACTCCACTCTGAGATCAC AGCTGGGACCCGTGGCTCCTGTGCCCACCCCCATGGCACTGCTCTGTCCCAGCTGCCCCTGTTAAAGGCTGTGATCAAAG AAGTGTTGAG

    4. 201 nucleotides

      GTATAGGCGCGGTGCTGCTGGGATCGCGCCTGGGCTGCCTAGAGGCTGAAGTCCCTCCTGACACAGAAACCTTCATACAT GCAGTGGGCTCAGTGTTTGTGTCTACACTCTTGACCATGGCGATGCCCAACTGGTTGCACCACCTTATACCTGGACCCTG GGCCCGCCTCTGCCGAGACTGGGATCAGATGTTTGCCTTTG

  • Mouse introns

    1. 593 nucleotides

      GTAAGGGGGCAGTCCTTGCCCTTGGTAAGACTGAGCAGGGAGAGCCGGCTTTAATGGCAGAAAGGACCACGGTGAAATAA CACAGGAAGGAGGGTCAGTGAGGGTGGGGACCTGTGGATTATGAAGAACTCACGCTGGGGACCATAAAAGGTTCCACTGC CCCGGATTCAATACCTAACTCCCCGGCAAAGGGATGTACTGTCGCTTCATACACAGTAAACCCTGCAGATCCAGGACAAG CGTGCTGAAGGAGGGAGAGCGCTGTGCTATCCTGCAGATGAAGCTTAAAGCTACGCGCTCCTCTTCTTTCACTAGAGGCT CCTCTTGAGGTACAGTTAGGAGAAGAGCCCTGAAGGAACTGCTCCCCCTAGGCTAGAGCCAGATAACTAAAAAGAAGTGC TAAATGTCTACTGTTTTGCCATTCTCTCTCAAACTTCATGGGATGGGAGAAAAAGTTTGCCATTTGGGGGCCCTACGCTA GCCCGGCACTGAAAAAGCTCCCTTTTCCCCAAGCCTAGCCAACACCTTGGCCCTGGCACAAGCCAAAGCAAATTCACCCG CCCAGGTATTCAAATGCGCCGATTCTCTCAG

    2. 202 nucleotides

      GTGATGGGGGAAGGAAAGCAGGAAATAGATAAAATGCTAGCGGGGAGCAGAGGAAGCTGGCAGTGTGTGGAAGGGGGTGG GGGGAGGGAGGAGAGAAAACTGGCCCCCTACTCCTGCATTTGGAAGCTGGAGACAAGGGGACTGGAGGCGCTGTGTTCCC CAGCCTCACCCTGCTGAATCCATTTTCTGTTTCATGACCTAG

    3. 384 nucleotides

      GTGAGTAAATCTTTCTGCTAAGCCATTCCTTACTGCTTTGGGCACAAGTCATTCTCAAACACTCCGGGAGCCTTTCCAGC CCCCCTCCCCCAGCATAATGGGAGTAGTAGAGGGAGGTCCTTACCAACAACCAAGGCCCACTTTTAAACTGGTCTGCAGA TCCTCTTCTTCACATTCCCCACCCTGCTGCATTCTTGGGCTCAGACTGAAAACTCCGATCCCTCTGCGAGGAGGGGTAAG GTGTTGAGATAGAGTCTTGCTATACAGCCCAGGCTGGCCTTGAACTCTCTCTCTTCCTGCTTCAGTTTTCTGAGGGCTGG AACTGCAAGTGTGGACATGAAACTCAGCTACTGAACTGACAAGTCTGTCTTTCTTTCCCACCAG

    4. 425 nucleotides

      GTGAGTCGACCCCTGAGCACCTTATTCCTGCCCCGACTCCCACAGCCAAGTTGGGCTTGGAGGGAGGTCGGAGGTTTCCA CCAATCTTCCTGGCATTTCCCCGGTTCTCCAGTCTGTACTCCAGTCCGAACGCAGGTAGAGCCGATTCCTCACCCCTCCC TGCATGTTTGGGGCCAAAATCCTACGATTCCACGAGATAGGCGAGGGCACCAGCATTTGGCTGGAACGTGAGCATCTGTG ATTCAGTTTACCATGGAACCCACTCCCATCCCTGAGCAGGAAGTGAGTAAAGAGGAACGGAGATGAGAGATTGGTGAGGT CAGGGTGATTTCTACACCCGGAGAGAGCAGACATAATACTCCTGGTCACCCTAGCCTTCTCCACACACGCTCACGTCCCT AAAGTCCCTCTCTGCACCCGGGCAG